Download Bioinformatics: A Practical Approach by Shui Qing Ye PDF

By Shui Qing Ye

ISBN-10: 1584888105

ISBN-13: 9781584888109

An rising, ever-evolving department of technology, bioinformatics has prepared the ground for the explosive progress within the distribution of organic info to numerous organic databases, together with the nationwide middle for Biotechnology details. For progress to proceed during this box, biologists needs to receive uncomplicated machine abilities whereas computing device experts needs to own a basic realizing of organic difficulties. Bridging the distance among biology and laptop science, Bioinformatics: a realistic technique assimilates present bioinformatics wisdom and instruments appropriate to the omics age into one cohesive, concise, and self-contained quantity.

Written by means of professional members from world wide, this functional publication offers the main state of the art bioinformatics purposes. the 1st half makes a speciality of genome research, universal DNA research instruments, phylogenetics research, and SNP and haplotype research. After chapters on microarray, SAGE, law of gene expression, miRNA, and siRNA, the booklet offers commonly utilized courses and instruments in proteome research, protein sequences, protein services, and sensible annotation of proteins in murine types. The final half introduces the programming languages utilized in biology, web site and database layout, and the interchange of information among Microsoft Excel and entry.

Keeping advanced mathematical deductions and jargon to a minimal, this obtainable ebook deals either the theoretical underpinnings and sensible purposes of bioinformatics.

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Additional info for Bioinformatics: A Practical Approach

Example text

If there appear to be multiple entries that are likely to be splice variants, the nucleotide range indicated at the end of the link may serve as a reference. The Genome Viewer section features the diagrammatic representation of the genome, which corresponds to the available annotation tracks, for quick data finding. Depending on the stage of the assembly, the actual track options will increase over time. 2. The Genome Browser Gateway: text search and its choices. Text search interface (panel A) and detailed start page choices (panel B) are illustrated.

Edu/annotation/argo/): It is a free, downloadable comparative genome browser that provides a dynamic view of whole-genome alignments along with their associated annotations. indb 4 7/18/07 8:08:23 AM Genome Analysis <  each axis and (2) the parallel view displays two genome annotations horizontally, synchronized through a panel displaying local alignments as trapezoids. Users can zoom to any resolution, from whole chromosomes to individual bases. They can select, highlight, and view detailed information from specific alignments and annotations on multiple platforms.

On this Genome Browser Gateway page, you can find a list of examples of valid position queries for the human genome. edu/goldenPath/help/hgTracksHelp. html). • Select “MIF (NM_002415) at chr22:22566565-22567409 — macrophage migration inhibitory factor” under Known Gene. 5x, 3x, or 10x to zoom in or out; click “Base” to zoom in to the nucleotide level. , arrowheads pointing to the right indicating that the 5' is on the left-hand side and 3' is on the right-hand side). • Click “DNA” on the top of the navigation bar.

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Bioinformatics: A Practical Approach by Shui Qing Ye

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